FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences895448
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGCTAC2400.00513696319.533648145
TGCATGC5100.001147438311.2024153
CTCAAAT7854.031165E-49.1449951
GTTCCAA7400.00240018458.7309991
ATCAACT7750.00364644668.3366961
CAACGAT8450.00793047.6460821
CTGAAGC9800.00361568887.3253281
CTTTTAT17552.4601686E-66.95384361
TTTTGGA11650.00270359336.7438387
CTTCCAT14605.86099E-46.39210131
CAAAGAG12700.00631547166.2178771
CTTCAAG13150.0090579786.0050981
Produced by FastQC (version 0.11.5)