FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences853889
Sequences flagged as poor quality0
Sequence length100-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTTAGA1800.00601934929.05068145
CACACGT4000.027.3935577
CACGTCT4900.023.7597189
ACACGTC5750.020.2474128
AGAGCAC6401.09139364E-1016.0490323
AGCACAC7103.092282E-1115.4329915
GCACACG7004.2200554E-1014.675126
GAGCACA7651.6025297E-913.4282154
TGTAACT4300.005621067211.14854057
AAGAGCA10401.4947364E-79.8786422
GAAGAGC11355.1393545E-79.0730511
CAAAGAT9454.450742E-47.99132731
ACTGACT3302.9565854E-87.886947625-29
AGTCACT3055.6570025E-77.634091420-24
AAAAAAA18500.05.77512960-64
CAGTCAC4752.599143E-65.766929620-24
CTCGTAT4453.295114E-55.53962135-39
CCAGTCA5109.082265E-65.371159620-24
CTTTTTT20703.7894252E-45.3064941
GTCACTG5752.4600686E-65.240383620-24
Produced by FastQC (version 0.11.5)