FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences967438
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAGCCG3300.00915299213.1123083
CTTAAAC6403.3936958E-612.45898151
GTTTAAT9602.7866772E-69.8161681
CAAACAC7700.00315091678.4726951
CTCTATT8050.0047054658.1043181
CTTCCCA8350.0065362257.81314471
TAAAACC9600.0028152957.51536752
CCCGCAC8750.0099306177.45597271
CTTTGAT13702.9938017E-57.40759661
CGATAAG10900.0092365366.6503321
CAAAGAT14253.8796332E-46.6129971
TAAACTT12700.0060233476.2464143
CTTATTT15450.00103266496.09936671
CTTTTCA19356.605487E-55.99389171
CTTTCAT16050.00163087915.8713521
CAAAAAC22254.8813544E-45.2126651
Produced by FastQC (version 0.11.5)