FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013625

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013625
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2690975
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTAGGA8550.0096115067.48430971
CAACTCA12450.00577438066.27278959
CCTCAAT21107.663128E-66.0654831
GTACCGA15300.0077690175.5683598
CTTCCCC18000.00132668375.5300731
CTCTTAT20852.560785E-45.45618721
CGTTTAT22251.1058737E-45.43243171
CTTCGAT24709.490416E-55.1814451
CTCCAAC20900.00154999155.1029381
CTTTGAA46806.2755134E-105.0135281
Produced by FastQC (version 0.11.5)