FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1008967
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCAACCC4350.00471115811.4161848
CTTGGAT6406.8638497E-410.0141361
CTCAAAT6900.00136696829.2884741
CTAAAAT7050.0016630759.0908471
CAATGAT13002.1390242E-68.2167271
CTATAAT9603.5585888E-48.1596671
AATTAAT8000.00522065268.011311
ATCAAAT13352.6893966E-57.4678871
CTCAAAA11954.6518547E-47.15095951
CTTCTCT10150.00550490437.0159241
TCAAATA11300.0020960326.9090792
CTTCCAA10450.00729976876.814511
ATTATTC12800.00106112396.65193563
CTTCAAT13550.00193797966.30656531
CTTTATT14958.6079E-46.19231651
CTTCAAC12950.00840566.04886441
CCTCTTT12950.00840566.04886441
ATATTTA15400.0083883145.52888154
CTTTATC17100.0042741615.41374971
Produced by FastQC (version 0.11.5)