FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3415313
Sequences flagged as poor quality0
Sequence length100-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTTTAG13101.4179623E-47.18055771
CTCGAAT13902.9352898E-46.7672881
CTTAAAT17751.3499073E-46.1147541
CTCAGAT16550.00240794455.68370441
TAAAATT29602.693705E-75.60559942
CTCGGAA24651.1768832E-55.57728431
CTAAAAT17250.0039332165.4530611
CCCAAAC18900.00196875055.35984661
CTCCGAA30252.2704226E-65.2623951
CTTCGAA25601.2648411E-45.08766651
TTTAAGG18500.0093478785.0647367
ATCCAAT24503.5928396E-45.0207541
Produced by FastQC (version 0.11.5)