FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences896214
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAATCG1050.00782658727.5327877
CTTGAAT7902.8885624E-611.0219241
CTCCCTT5550.002033976810.4592431
ATTCGAT6355.3719146E-410.2842351
CTTACGG6456.202818E-410.124791
CTTAAAA11703.580226E-79.3026921
CTCCGAT6550.0079885928.86241151
CTCATAT8659.527232E-48.3885561
CTCATCT7800.00350833968.3724231
CTTCAAG8750.00106767838.2926851
CTTCGAT10751.103034E-48.0998331
GTATGAT8300.00613748057.86805961
CAAAGGT9400.0022509087.6886783
TTCGATA10457.524974E-47.60901832
TTTCACC10457.538439E-47.60774477
CCCAGAA8750.0098412837.46341661
CCCATTT12759.775656E-57.39837651
CTTTCTT24959.895302E-106.97981551
CTCAAAA10500.0063732056.91057161
CTTTGTT12400.0044043456.4368631
Produced by FastQC (version 0.11.5)