FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1137014
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCTAGG600.0089302749.276146145
TCTAGGA1100.00984592926.2674772
CATAAGT8004.049544E-59.9639441
CTTTAAT12901.5254045E-89.5496581
CTTTAAC8558.6057174E-48.4754451
GTTCAAT10357.2042225E-58.4017451
CTTTTAA14701.1326956E-67.8873531
CTTTCAA15803.3503457E-67.33823351
CTTCTGT18305.400598E-77.12771031
CCCCGCC11750.00254158236.78396271
TTGATGC15751.9520328E-46.4209393
TCAATGT12550.00523526976.3314043
CTTAAAA13900.0021223676.2559761
CAACAAA16302.9214984E-46.22399231
CATCAAT20408.697097E-45.32831241
TTGTATT18100.0070462465.18818952
CTTTCAT19750.00334638175.1367631
Produced by FastQC (version 0.11.5)