FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013748

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013748
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1447654
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCAAT9600.00287739197.49919181
CTCAAAT9850.003699347.30885651
CTCACGG11250.00172240617.0392421
CTCGAAA11600.00237960536.82685041
CTTTGAT21151.3127647E-76.80777741
CTTAAAA12909.83788E-46.6969531
CGAACAT12950.00102794366.67109541
TTACGGT12200.0042564586.45859533
CACAGAT12450.00499119666.36076071
AATTCAG12550.00571583866.27847535
CTTCAAC18051.8168132E-45.98273471
GTTCAAA16000.00170755835.84936951
CTTTTAT21856.9533315E-55.60122731
TTGAAGG15650.0089417985.4972732
GTCAAAG17250.00417021065.42550231
TTGATGT23101.73395E-45.27159643
Produced by FastQC (version 0.11.5)