FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013777

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013777
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1597175
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACGTCT6707.7110475E-510.7764819
CACACGT6557.484504E-49.9209437
ACACGTC7552.577329E-49.5632348
AGCACAC9550.00265735767.5604625
GGTACAT11602.7473565E-47.48703051
CTCGAAG13251.6248981E-47.1009071
GAGCACA10400.00609883346.9427584
CTTGGCT10750.00821153456.7325231
CTCCCAG10800.0085876016.70135451
CACGAAT10850.0091873626.65460063
GTAAAGT13050.00770401076.1005431
CTTCGAT17005.1045424E-45.96026371
CTTTGAC18650.0016579525.43294761
CAACAAT22255.00052E-45.20446731
GTTTGAT18450.0086221835.09956741
Produced by FastQC (version 0.11.5)