FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013778

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences861495
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTTAAT6400.0075702848.9206771
CTGCCAC7550.0031489868.4730653
CCTCCAT7650.00342031968.3959311
CAATTAC8000.0053068987.99645579
ACATTCC9300.0023863537.6429686
CCCCCCC2150.0087260276.6908126100-104
CTTTCAT15000.0058824585.7092331
Produced by FastQC (version 0.11.5)