FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013834

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013834
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2417939
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCAAAC18854.802415E-56.12812661
CTCGGAT13050.0079064966.08557031
CATAGAT18602.6345404E-45.8223381
CTTAATA16500.00238424985.6882481
CCTGAAT24451.0646565E-55.61039971
CCCATAC15500.00745100165.58944461
CACGAAT15550.00772036335.5714721
CTTTTGG27251.953611E-65.56380461
GGGGGGG3955.089278E-45.5465555115-119
CAACATT24751.3064742E-55.54239561
CCCACCA15650.0082853245.5358711
CTTCTGT28708.6549335E-75.5342641
CTCCAAT18350.00139460055.50821731
CCCCGAA17100.00364094135.488661
CCAAGAT17100.00364094135.488661
CCCGGAT27752.7291771E-65.46355631
CCCAGCA26507.0551123E-65.4488291
CTCCGGA25201.7662776E-55.44342371
CTCCGCG17250.0040363695.44093281
CTCTTCT27651.4808054E-55.22220561
Produced by FastQC (version 0.11.5)