FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences873800
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCCAAG3100.00860890613.2343441
GCCAATT6050.00677837069.0416451
CAAGAAT12007.7553524E-46.83774381
CAAAAAT19053.7657628E-76.8197971
TTCCATT16409.9718745E-56.24938152
CTTTGAT13650.00331652286.0112041
CAAAAAG18756.106767E-45.47019531
CCGGAAT16400.0042500825.41613053
GTTTCTT16800.0055934395.29111151
Produced by FastQC (version 0.11.5)