FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1180695
Sequences flagged as poor quality0
Sequence length100-151
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCCGCT5700.002594149210.15788651
GTCCGGT6050.0042478729.570241
CTTGGAT9402.3816344E-48.4694081
AATCGAA11700.00248439456.79870845
CTTATAT18304.177691E-66.72335531
GTTCCAT15107.989264E-46.23095561
CTATAAT15000.005038665.7899951
CTTATTT21100.00138679875.14513831
Produced by FastQC (version 0.11.5)