FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4008203
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCAATT16355.0041614E-56.57102061
CTCAGAT28201.8333594E-86.09566971
GTTGCTA15700.0093712965.47445541
CTCAATT24055.552481E-55.36064151
CCTCAGA24909.607194E-55.17764761
GTCAAAT30603.4288787E-65.1494471
CCTCGAA32702.251394E-65.03778271
Produced by FastQC (version 0.11.5)