FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013973

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013973
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1127509
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCTAAT950.00492453830.2725581
CACACGT3855.020411E-1022.3141547
CACGTCT5057.3305273E-1018.4294289
ACACGTC5808.0193786E-814.8119818
GCACACG7058.629304E-712.1857426
AGCACAC7251.209135E-611.850115
AGAGCAC8607.9541496E-710.8243313
GAGCACA9051.7094217E-59.4948664
TTCAATC14204.2838813E-46.55965472
GTTCAAG12300.004457296.42984151
AAGAGCA15802.2595316E-46.3488772
AATATAA16102.9117128E-46.22560175
CCTCGAT13150.0089218776.0142251
AAAATTT16000.0018193945.8180793
GAAGAGC16150.00193784065.7874011
AAGATCA15700.0093979745.47218475
Produced by FastQC (version 0.11.5)