FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2118095
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACGAGT6300.00587538359.2014241
CTTACGG11051.6703423E-58.5248481
GTTTAAT14306.4961605E-67.6008261
CACGAAT13652.8730985E-57.4319181
CTCGGCT16707.670151E-66.9423911
GTATAAG11750.00254556446.7836021
ACGAATT14404.6958687E-46.51105742
CTTCGAA13450.00146746186.464941
CTCAAAT14705.697948E-46.4081341
CTTCGAT25659.080577E-86.21499631
CTTAAAT16804.3209564E-46.0384341
CTTCGCT15650.00121301856.01914171
GTTCAAT16250.00190285385.79689651
CTTTGAG18000.00104302345.63587141
GTTTCAT25804.1310195E-65.6171481
CTTCAGC27552.2333697E-65.52335931
ATCAAGT17200.00395198865.4506036
GAATTCG17900.00631654735.2374515
CTTCTGT30502.5800655E-65.226711
CTAAAAT19750.00335341065.13649031
Produced by FastQC (version 0.11.5)