FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005013990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005013990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1251501
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCAAAT9854.01665E-48.0687281
CCCAGAA13351.8188577E-47.0357551
CAAACAT13451.9934867E-46.98344471
CCCAGCC10950.0099667086.5983371
CCAAAAT15751.9469314E-46.42238141
CTCCGGA13950.00228460836.2152081
GATGAAT18502.5448555E-45.83648736
CTTTCAC14900.00476793765.81893631
CTTTAAT17300.0041343235.42932561
CATCGAC17650.00523339635.32166151
AACAATA19650.00335547425.13576562
Produced by FastQC (version 0.11.5)