FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005014243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005014243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461340
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCTAAT1600.002199284522.6101021
TCTAATT3153.6150197E-416.043432
GCTCCGT3457.2327844E-414.6435865
GTTAAAA4850.00912697510.4426051
ATTTTAT14400.00319744556.0293611
Produced by FastQC (version 0.11.5)