FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005014341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005014341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences954599
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTGGAT5500.001920222110.5319781
CTCCAAT8300.0062560257.85139941
CTCCGGA8550.0081598647.6218261
CCCGCCT8700.0095305647.49041561
CCTTTAT13301.6900612E-47.077411
AAGATTG12950.00101263056.67932223
CATAAAT14153.6093686E-46.65226551
GAAGATT15952.3460659E-46.3301782
GGCAAAT12850.00652682976.1982941
GTTTTAT16704.0314274E-46.0700771
CAAAAAC18550.00153803355.46470551
Produced by FastQC (version 0.11.5)