EGAF00005014441 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005014441
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	84429912
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	34175	0.0	12.209403	1
ATCGGAA	37875	0.0	11.293808	2
TCGGAAG	39680	0.0	10.670436	3
CGGAAGA	43965	0.0	9.646739	4
TATGCCG	12470	0.0	9.557654	45-49
CGTATGC	15260	0.0	7.9337397	45-49
CTCGTAT	15150	0.0	7.876609	40-44
TCTCGTA	14930	0.0	7.351707	40-44
ATGCCGT	17715	0.0	6.8669963	45-49
GCCGTCT	18655	0.0	6.6221366	50-54
TCCGATC	5725	0.0	6.4585595	3
ATCTCGT	19290	0.0	5.8478947	40-44
CGTCTTC	23740	0.0	5.4602256	50-54
CCGTCTT	23770	0.0	5.398435	50-54
TGCCGTC	17310	0.0	5.277124	50-54
AGATCGG	34820	0.0	5.2674584	145
AGAGCAC	89840	0.0	5.253116	8
TCGTATG	18140	0.0	5.115507	45-49
GAGCACA	96730	0.0	5.013893	9