FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005014622

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005014622
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96480698
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA148500.012.06725855-59
GAGCGTC453200.011.3737499
GATCGGA489400.010.736951
TCGCCGT170500.010.53570355-59
AGCGTCG364700.010.2176569
AGAGCGT520100.010.1198418
ATCGGAA551000.09.6066442
GCCGTAT196200.09.38472155-59
TCGGAAG576450.09.1800753
GTCGCCG198200.08.90964155-59
CGGAAGA619150.08.6295714
AAGAGCG629900.08.5513397
TGGTCGC231150.08.01591750-54
CGTATCA237150.07.75215860-64
GTGGTCG250400.07.492318650-54
TCTCGGT329250.05.96671645-49
CGGTGGT363050.05.30332150-54
CTCGGTG373900.05.281332545-49
GCGTCGT340350.05.154565310-14
CGTCGTG343500.05.136842710-14
Produced by FastQC (version 0.11.5)