EGAF00005014680 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005014680
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	73459100
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	8610	0.0	8.756926	55-59
TCGCCGT	10250	0.0	7.610442	55-59
GTCGCCG	11905	0.0	6.5889974	55-59
GCCGTAT	12280	0.0	6.4468226	55-59
GAGCGTC	38010	0.0	6.141187	9
TGGTCGC	13835	0.0	6.0158577	50-54
CGTCGTG	28345	0.0	5.934832	145
AGCGTCG	31065	0.0	5.928697	145
TAGATCG	18355	0.0	5.8071074	145
GATCGGA	46610	0.0	5.7870965	145
AGAGCGT	42980	0.0	5.6671824	8
AGATCGG	49615	0.0	5.4365935	145
GTGGTCG	15560	0.0	5.36757	50-54
GCGTCGT	28620	0.0	5.3102236	140-144
TCGGAAG	50935	0.0	5.309938	145
CGTATCA	15590	0.0	5.2360363	60-64
ATCGGAA	49500	0.0	5.170903	145
CGGAAGA	53130	0.0	5.1178594	145