FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005014764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005014764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54844106
Sequences flagged as poor quality0
Sequence length151
%GC41

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA85050.010.3311555-59
GAGCGTC311800.09.881339
TCGCCGT99550.08.88462255-59
AGAGCGT356250.08.6687818
GATCGGA366650.08.6259081
ATCGGAA391950.08.120642
GTCGCCG109650.07.986907555-59
GCCGTAT116250.07.870218355-59
TCGGAAG399800.07.85143853
CGGAAGA421200.07.5385864
AAGAGCG419200.07.4189047
TGGTCGC133650.07.09494650-54
GCGTCGG39000.07.0643954145
GTGGTCG145450.06.54925650-54
CGTATCA142000.06.442775760-64
GACGGTT162000.05.657164630-34
Produced by FastQC (version 0.11.5)