EGAF00005014911 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005014911
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	78347519
Sequences flagged as poor quality	0
Sequence length	151
%GC	42

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	16520	0.0	11.093547	45-49
GATCGGA	69720	0.0	9.535711	1
ATCGGAA	71345	0.0	9.480009	2
CTCGTAT	19085	0.0	9.405361	40-44
TCGGAAG	72245	0.0	9.331808	3
TCTCGTA	18915	0.0	9.137278	40-44
CGGAAGA	74795	0.0	8.994272	4
CGTATGC	19160	0.0	8.853679	45-49
ATGCCGT	21345	0.0	8.619833	45-49
GCCGTCT	22425	0.0	7.6355453	50-54
CGTCTTC	27275	0.0	7.138942	50-54
ATCTCGT	24105	0.0	6.821076	40-44
CCGTCTT	27565	0.0	6.5641603	50-54
TCGTATG	21255	0.0	6.534882	45-49
TGCCGTC	22430	0.0	6.308747	50-54
AGAGCAC	113400	0.0	6.207037	8
GAGCACA	120750	0.0	5.865237	9
GAAGAGC	127710	0.0	5.727235	6
GTATGCC	37575	0.0	5.074113	45-49