FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005015018

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005015018
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52596176
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA94900.011.09145755-59
TCGCCGT107250.09.94944255-59
GCCGTAT118750.09.02254555-59
GTCGCCG123950.08.25802855-59
GAGCGTC374300.08.2500859
TGGTCGC142800.07.827574350-54
AGAGCGT417250.07.5920228
GATCGGA456400.07.36542841
CGTATCA145950.07.291142560-64
GTGGTCG156650.07.08923650-54
ATCGGAA477800.06.96363542
TCGGAAG479800.06.9044053
CGGAAGA495900.06.6362534
AAGAGCG488300.06.62078247
CGGTGTA172800.06.325954435-39
AGCGTCG318900.06.16003859
ACCGGTG187600.05.757340435-39
AGATCGG469250.05.656468145
CACCGGT186900.05.63927935-39
TCTCGGT209150.05.600874445-49
Produced by FastQC (version 0.11.5)