EGAF00005015079 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005015079
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	63773228
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	29075	0.0	13.903167	1
ATCGGAA	31365	0.0	12.991565	2
TCGGAAG	32715	0.0	12.298404	3
CGGAAGA	34440	0.0	11.514017	4
TATGCCG	11905	0.0	9.317054	45-49
CTCGTAT	13845	0.0	8.755201	40-44
TCTCGTA	13430	0.0	7.870537	40-44
ATGCCGT	15660	0.0	7.8422055	45-49
CGTATGC	13855	0.0	6.7813325	45-49
AGAGCAC	70945	0.0	6.2028174	8
GCCGTCT	16205	0.0	5.95897	50-54
ATCTCGT	17045	0.0	5.903578	40-44
CGTCTTC	20640	0.0	5.816566	50-54
GAGCACA	78185	0.0	5.7582464	9
GAAGAGC	79595	0.0	5.674204	6
CCGTCTT	20775	0.0	5.4926224	50-54
TCGTATG	15895	0.0	5.4549055	45-49
TGCCGTC	15540	0.0	5.4488873	50-54
AGATCGG	29110	0.0	5.379511	145