EGAF00005015123 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005015123
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	74168316
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	13510	0.0	9.261601	45-49
CTCGTAT	15305	0.0	8.08999	40-44
CGTATGC	15215	0.0	8.052216	45-49
GATCGGA	41595	0.0	8.048696	1
TCTCGTA	15155	0.0	7.8256574	40-44
ATCGGAA	44760	0.0	7.521196	2
ATGCCGT	17115	0.0	7.3616223	45-49
TCGGAAG	46415	0.0	7.3404255	3
TATCTCG	16570	0.0	7.0698843	40-44
CGGAAGA	48260	0.0	7.044778	4
GCCGTCT	18635	0.0	6.6678386	50-54
ATCTCGT	19680	0.0	6.0336795	40-44
CGTCTTC	23680	0.0	5.577895	50-54
TAGATCG	16670	0.0	5.522855	145
AGATCGG	43120	0.0	5.5143027	145
CCGTCTT	24015	0.0	5.355187	50-54