EGAF00005015141 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005015141
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	34765674
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	6200	0.0	8.676115	45-49
GATCGGA	24265	0.0	7.6904883	1
CTCGTAT	7065	0.0	7.5932493	40-44
CGTATGC	7095	0.0	7.4794865	45-49
ATCGGAA	25355	0.0	7.4365478	2
TCGGAAG	25760	0.0	7.429536	3
CGGAAGA	27010	0.0	7.327261	4
TCTCGTA	7290	0.0	7.2992225	40-44
ATGCCGT	8475	0.0	6.501102	45-49
GCCGTCT	8870	0.0	6.081093	50-54
ATCTCGT	9555	0.0	5.7358685	40-44
AGATCGG	25090	0.0	5.7254043	145
ACGACGC	1700	0.0	5.287813	20-24
CGTCTTC	11025	0.0	5.16864	50-54
TAGATCG	9090	0.0	5.1200714	140-144
CGACGCT	1885	0.0	5.0765104	25-29
TCGTATG	8060	0.0	5.018943	45-49