EGAF00005015184 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005015184
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	47325047
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	9620	0.0	7.309459	55-59
GCGTCGG	4155	0.0	6.806673	145
TCGCCGT	11075	0.0	6.5193477	55-59
GCCGTAT	11835	0.0	6.1129494	55-59
GAGCGTC	58065	0.0	5.9556365	9
GTCGCCG	12675	0.0	5.7078314	55-59
GTCGTGT	48235	0.0	5.5776715	145
AGCGTCG	52300	0.0	5.4353266	145
AGAGCGT	63750	0.0	5.4245343	8
CGTATCA	13990	0.0	5.30615	60-64
ATCGGAA	74245	0.0	5.2645693	145
CCGTATC	13715	0.0	5.253973	60-64
CGTGTAG	63645	0.0	5.2070675	145
TGGTCGC	14225	0.0	5.1877837	50-54
CGTCGTG	48035	0.0	5.1027017	145
TCGTGTA	47290	0.0	5.0910816	145
GCGTCGT	49250	0.0	5.065164	145
GGTCGCC	14560	0.0	5.0087013	55-59