EGAF00005015213 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005015213
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	116946026
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	17350	0.0	8.6577215	45-49
CGACGCT	4190	0.0	8.477501	7
ACGACGC	3615	0.0	8.422225	6
CTCGTAT	21215	0.0	7.2038064	40-44
TCTCGTA	21050	0.0	6.8194222	40-44
GATCGGA	64760	0.0	6.803166	1
CACGACG	4875	0.0	6.5428033	5
ATCGGAA	69085	0.0	6.5266957	2
TCGGAAG	70415	0.0	6.36224	3
CGTATGC	21200	0.0	6.244221	45-49
ATGCCGT	25385	0.0	6.1058183	45-49
CGGAAGA	74960	0.0	6.0248313	4
AGATCGG	67655	0.0	5.5938315	145
TAGATCG	25860	0.0	5.4389114	145
GCCGTCT	25160	0.0	5.341995	50-54
CGTGTAG	29090	0.0	5.298326	30-34
CCGTGTA	29965	0.0	5.269419	30-34