EGAF00005015214 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005015214
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	116946026
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	13415	0.0	8.927638	55-59
TCGCCGT	16940	0.0	7.3352447	55-59
GAGCGTC	60955	0.0	7.2914395	9
GCCGTAT	19150	0.0	6.6628666	55-59
AGAGCGT	68640	0.0	6.6124043	8
GTCGCCG	19215	0.0	6.3762226	55-59
GATCGGA	70705	0.0	6.296809	1
ATCGGAA	74980	0.0	6.062648	2
TCGGAAG	77290	0.0	5.815575	3
AAGAGCG	81030	0.0	5.6187453	7
TGGTCGC	23125	0.0	5.5929084	50-54
CGGAAGA	82980	0.0	5.5303745	4
AGCGTCG	49250	0.0	5.4908724	145
CGTATCA	24970	0.0	5.319259	60-64
GTGGTCG	26075	0.0	5.1214147	50-54
AGATCGG	74525	0.0	5.058714	145