EGAF00005015229 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005015229
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	59241583
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGATC	4635	0.0	13.13913	3
TATGCCG	11660	0.0	10.246999	45-49
CCGATCT	6685	0.0	9.00118	4
CTCGTAT	13450	0.0	8.926172	40-44
TTCCGAT	7415	0.0	8.604162	2
CGTATGC	13500	0.0	8.54963	45-49
TCTCGTA	13870	0.0	8.18545	40-44
ATCGGAA	37520	0.0	8.076274	1
ATGCCGT	15205	0.0	8.058205	45-49
TCGGAAG	38690	0.0	7.9077106	2
GATCGGA	34140	0.0	7.8116074	1
CGGAAGA	40670	0.0	7.594033	3
TATCTCG	14655	0.0	7.4402795	40-44
GCCGTCT	16165	0.0	7.3012037	50-54
ATCTCGT	16955	0.0	6.7131925	40-44
CTTCCGA	9860	0.0	6.6329	1
CGTCTTC	20045	0.0	6.249618	50-54
CCGTCTT	20140	0.0	6.025759	50-54
AGATCGG	34985	0.0	5.0572867	145