EGAF00005026479 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005026479
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	32539883
Sequences flagged as poor quality	0
Sequence length	101
%GC	52

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	22745	0.0	8.020093	94-95
TAGATCG	7970	0.0	7.897537	94-95
ATCGGAA	21660	0.0	7.7638817	94-95
AGATCGG	26670	0.0	7.6146016	94-95
GCGTCGT	9875	0.0	6.374012	94-95
AGCGTCG	11160	0.0	6.2573037	94-95
TCGTGTA	7725	0.0	6.2109356	94-95
TCGGAAG	25295	0.0	6.0472136	94-95
GTCGTGT	9390	0.0	5.944378	94-95
CGTCGTG	10475	0.0	5.7141366	94-95
AAGAGCG	19935	0.0	5.5165668	94-95
AGAGCGT	16450	0.0	5.515712	94-95
CGGAAGA	27400	0.0	5.4092636	94-95
GAGCGTC	16875	0.0	5.151592	94-95
AAGATCG	11195	0.0	5.134467	94-95