FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005028380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005028380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42066495
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA39900.06.39587255-59
GATCGGA239300.06.301653145
AGCGTCG153150.05.8226666145
ATCGGAA248350.05.750901145
AGATCGG257850.05.62337145
GAGCGTC193600.05.6171975145
TCGCCGT48850.05.431834755-59
CGTCGTG143900.05.0885544145
GCGTCGT142050.05.0221496140-144
TCGTGTA160250.05.0217924145
Produced by FastQC (version 0.11.5)