EGAF00005028455 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005028455
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	58245690
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	25935	0.0	9.814515	1
TATGCCG	9050	0.0	9.131992	45-49
ATCGGAA	28440	0.0	9.101506	2
TCGGAAG	29705	0.0	8.761912	3
CGGAAGA	32445	0.0	8.156035	4
CTCGTAT	10815	0.0	7.6416855	40-44
TCTCGTA	10610	0.0	7.4886923	40-44
CGTATGC	10520	0.0	6.8773966	45-49
ATGCCGT	12190	0.0	6.7202277	45-49
CGACACT	13030	0.0	6.298152	30-34
GTCACGA	13920	0.0	5.9267077	25-29
GCCGTCT	12990	0.0	5.759426	50-54
AGATCGG	27300	0.0	5.7099977	145
ACGACAC	12790	0.0	5.6454678	30-34
ATCTCGT	13710	0.0	5.4252625	40-44
CGTCTTC	17040	0.0	5.181868	50-54