FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005028524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005028524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58610156
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGTC363500.019.05029
AGAGCGT404750.017.1802588
CGCCGTA102300.016.86392255-59
GATCGGA431750.016.2093961
ATCGGAA454950.015.5357072
TCGGAAG464700.015.3012713
AAGAGCG467250.015.0063267
TCGCCGT117200.014.75706955-59
CGGAAGA483550.014.6622994
GTCGCCG128200.013.37777855-59
GCCGTAT132400.013.00815555-59
TGGTCGC144900.012.10701150-54
GTGGTCG156200.011.37966350-54
CGTATCA158350.010.9420260-64
CCGTATC149550.09.40444160-64
GGTCGCC153550.09.27147755-59
TCTCGGT206600.08.91230845-49
GAAGAGC873500.08.392356
CTCGGTG232300.07.86390245-49
CGGTGGT231700.07.8467850-54
Produced by FastQC (version 0.11.5)