FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005028544

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005028544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53201304
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGTC252250.016.2667129
GATCGGA266700.015.5521671
CGCCGTA95650.014.65946655-59
AGAGCGT289200.014.238558
AGCGTCG203600.013.8511669
ATCGGAA305450.013.6971492
TCGGAAG316950.013.3356683
TCGCCGT106900.013.18454855-59
CGGAAGA350150.012.0706144
AAGAGCG360400.011.7273297
GTCGCCG121050.011.71522755-59
GCCGTAT124750.011.41425555-59
TGGTCGC140400.010.16234650-54
CGTATCA146700.09.78579960-64
GTGGTCG151550.09.49121350-54
TCTCGGT192100.07.804589745-49
GCGTCGT188600.07.326414610-14
CGGTGGT208100.07.23254750-54
CGTCGTG193850.07.157912710-14
CTCGGTG220300.06.970090445-49
Produced by FastQC (version 0.11.5)