EGAF00005028623 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005028623
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17105326
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	3055	0.0	8.970007	45-49
CGTATGC	3545	0.0	7.811948	45-49
CTCGTAT	3425	0.0	7.6200256	40-44
TCTCGTA	3500	0.0	7.1253285	40-44
ATGCCGT	4140	0.0	6.724238	45-49
GCCGTCT	4150	0.0	6.4634633	50-54
AGATCGG	12615	0.0	6.380214	145
TAGATCG	4760	0.0	6.093301	145
CGTCTTC	5105	0.0	5.850772	50-54
GATCGGA	11990	0.0	5.8056602	145
ATCGGAA	12760	0.0	5.796276	145
CCGTCTT	5320	0.0	5.3145275	50-54
ATCTCGT	4770	0.0	5.2890215	40-44
ACACGTC	9380	0.0	5.2566085	145
TCGGAAG	12965	0.0	5.1453495	145
CGTCTGA	8940	0.0	5.0286765	145