EGAF00005028624 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005028624
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17105326
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	2010	0.0	10.819229	55-59
TCGCCGT	2530	0.0	8.710121	55-59
GCCGTAT	3030	0.0	7.5598917	55-59
GTCGCCG	3020	0.0	7.3929005	55-59
TGGTCGC	3560	0.0	6.8008986	50-54
GTGGTCG	3765	0.0	6.661637	50-54
AGCGTCG	8705	0.0	6.582764	9
CGTATCA	3690	0.0	6.2469797	60-64
AGATCGG	13335	0.0	6.1429954	145
CGTGCGG	1325	0.00887763	6.018268	145
GAGCGTC	10460	0.0	5.8943677	9
ATCGGAA	13310	0.0	5.6643496	145
GATCGGA	12710	0.0	5.4754577	145
GCGTCGT	8100	0.0	5.4593325	145
AGAGCGT	11655	0.0	5.4152427	8
CGTCGTG	8075	0.0	5.009651	140-144