EGAF00005028648 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005028648
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	51743814
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	7270	0.0	12.445455	55-59
GAGCGTC	24180	0.0	11.452826	9
TCGCCGT	8345	0.0	10.668481	55-59
GATCGGA	26465	0.0	10.5225725	1
AGAGCGT	28055	0.0	10.025985	8
ATCGGAA	29570	0.0	9.517394	2
GTCGCCG	9715	0.0	9.343124	55-59
GCCGTAT	9840	0.0	9.268642	55-59
TCGGAAG	30715	0.0	9.228435	3
CGGAAGA	32970	0.0	8.81718	4
AGCGTCG	19325	0.0	8.815641	9
AAGAGCG	33830	0.0	8.357294	7
TGGTCGC	11605	0.0	7.983504	50-54
CGTATCA	12090	0.0	7.831429	60-64
GTGGTCG	12900	0.0	7.440568	50-54
TCTCGGT	17405	0.0	5.772767	45-49
CGGTGGT	19360	0.0	5.2498937	50-54
CCGTATC	11645	0.0	5.092581	60-64
CTCGGTG	19995	0.0	5.0032535	45-49