EGAF00005028766 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005028766
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	56331226
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	5715	0.0	8.752385	55-59
TCGCCGT	7140	0.0	7.0868096	55-59
CGTCGTG	23960	0.0	6.262702	145
AGCGTCG	26295	0.0	6.120093	145
GCCGTAT	8990	0.0	5.967131	55-59
AGATCGG	43050	0.0	5.9103355	145
GTCGCCG	8635	0.0	5.7758994	55-59
GATCGGA	39985	0.0	5.765118	145
GCGTCGT	24045	0.0	5.70378	140-144
GCGTCGG	4005	1.6916601E-10	5.610963	145
TCGTGTA	25885	0.0	5.376891	145
ATCGGAA	42350	0.0	5.323352	145
CGTGTAG	26180	0.0	5.2609253	145
GTCGTGT	26170	0.0	5.2352366	145
TGGTCGC	10615	0.0	5.232648	50-54
TAGATCG	16120	0.0	5.216403	145
GAGCGTC	32100	0.0	5.0359106	145
TCGGAAG	43345	0.0	5.000465	145