FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005028768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005028768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17325971
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA18300.010.25606455-59
GAGCGTC74350.09.3459859
TCGCCGT22500.08.53262855-59
GATCGGA88200.08.0800331
AGAGCGT86500.07.95038568
GTCGCCG25350.07.46030455-59
ATCGGAA96250.07.3680912
GCCGTAT28100.07.13809455-59
AAGAGCG104600.06.84831677
TCGGAAG99400.06.8465663
GCGTCGG12950.0010903176.6376133145
CGGAAGA107450.06.4669524
TGGTCGC32350.06.28848150-54
AGATCGG93150.06.228775145
AGCGTCG59300.06.0397058145
TAGATCG34551.8553692E-106.0124354145
CGTCGTG53600.05.8801494145
CGTATCA37300.05.761358760-64
GTGGTCG36750.05.652523550-54
CGTGTAG64600.05.5441875145
Produced by FastQC (version 0.11.5)