FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005067680

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005067680
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3819468
Sequences flagged as poor quality0
Sequence length151
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAATCTA531950.0144.013872
AATCTAG536100.0142.953143
TCTCACG409500.0142.64056
CTCACGG410850.0142.260047
AGGCCGT397900.0142.098141
CATCTCA412850.0141.922094
CCGTAGT273450.0141.868559
GGCCGTA394700.0141.854252
TCACGGT412100.0141.793358
TAGGTGA540700.0141.790597
TCCGTAG273800.0141.73838
ATCTAGG543300.0141.712524
GTCCGTA270400.0141.56337
GGTGATA543250.0141.527249
CTAGGTG542500.0141.373616
TCTAGGT545550.0141.035055
GGTCTGT274650.0140.745332
TTCAGAC199500.0140.707056
CACGGTT415400.0140.68629
GCCGTAG405200.0140.683213
Produced by FastQC (version 0.11.5)