FastQCFastQC Report
Sat 4 May 2024
EGAF00005068030

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005068030
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57813867
Total Bases4.5 Gbp
Sequences flagged as poor quality0
Sequence length79
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGG977850.16913762229397317No Hit
CGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGTCCCGGC732760.12674467874636375No Hit
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC611770.1058171735857074No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)