FastQCFastQC Report
Thu 16 May 2024
EGAF00005068047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005068047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69305794
Total Bases5.4 Gbp
Sequences flagged as poor quality0
Sequence length79
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC4144160.5979528926542563No Hit
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC3383810.48824345046822487No Hit
GCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGC2199970.3174294489721884No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1877460.27089510005469386No Hit
CTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCC1714690.24740932915363467No Hit
CAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGG1316010.1898845571266379No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)