FastQCFastQC Report
Wed 8 May 2024
EGAF00005068469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005068469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4615974
Total Bases466.2 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT88910.19261373655917471No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA82480.17868384873918267No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC52850.11449371248624883No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)