FastQCFastQC Report
Thu 2 May 2024
EGAF00005068482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005068482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40206601
Total Bases3 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1260490.31350324788708206No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN604590.1503708308991352No Hit
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT554880.13800718941648413No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC511450.12720548051301328No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG509690.12676774144623665No Hit
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG450250.11198409932737165No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)