FastQCFastQC Report
Wed 8 May 2024
EGAF00005068483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005068483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6729938
Total Bases679.7 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA179690.26700097385741145No Hit
GTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGG102610.15246797221608877No Hit
GTTCGATTAGTCTTTCGCCCCTATACCCAGGTCGGACGACCGATTTGCAC82220.12217051628113068No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)