FastQCFastQC Report
Tue 7 May 2024
EGAF00005068495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005068495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11058704
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT287930.2603650482009465No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC180120.16287622853455522No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG154240.13947384793010104No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)